CDS

Accession Number TCMCG066C06836
gbkey CDS
Protein Id XP_034578890.1
Location join(29045850..29046759,29046837..29046933,29047187..29047289,29047378..29047431,29047515..29047589,29047714..29047782,29047862..29047945,29048153..29048350,29048470..29048975,29049052..29049181,29049956..29050047,29050238..29050410,29050605..29050807,29050896..29050997,29051701..29051863,29052423..29052712,29052793..29052930,29053015..29053094,29053209..29053305,29053403..29053532,29053663..29053907)
Gene LOC117842525
GeneID 117842525
Organism Setaria viridis

Protein

Length 1312aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA633601
db_source XM_034722999.1
Definition DNA mismatch repair protein MSH6 [Setaria viridis]

EGGNOG-MAPPER Annotation

COG_category L
Description Component of the post-replicative DNA mismatch repair system (MMR)
KEGG_TC -
KEGG_Module M00295        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K08737        [VIEW IN KEGG]
EC -
KEGG_Pathway ko01524        [VIEW IN KEGG]
ko03430        [VIEW IN KEGG]
ko05200        [VIEW IN KEGG]
ko05210        [VIEW IN KEGG]
map01524        [VIEW IN KEGG]
map03430        [VIEW IN KEGG]
map05200        [VIEW IN KEGG]
map05210        [VIEW IN KEGG]
GOs GO:0000217        [VIEW IN EMBL-EBI]
GO:0000404        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003684        [VIEW IN EMBL-EBI]
GO:0003690        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006290        [VIEW IN EMBL-EBI]
GO:0006298        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0008094        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016462        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016817        [VIEW IN EMBL-EBI]
GO:0016818        [VIEW IN EMBL-EBI]
GO:0016887        [VIEW IN EMBL-EBI]
GO:0017111        [VIEW IN EMBL-EBI]
GO:0030983        [VIEW IN EMBL-EBI]
GO:0032135        [VIEW IN EMBL-EBI]
GO:0032300        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0042623        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043570        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1990391        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCGTCGCGCCGAGCCAGCAATGGCCGCTCGCCGCTCGTGCGGAAGCAGAGCCAGATCACCGCCTTCTTCTCCTCCTCCCCCACCCCCTCACCTTCCCCGTCCACGCCGAACGCCGGCGCGCCCAAGCCCTCGCCGTCGCCGCTGAACCCCAGCGCGGCGCGGAGGTCCACGCTCGCCGCGGCCTCCCCTTCCCCTCCCAAGCAGCCGATGCCGACGCCGCCGCCGGCGCAGGAAGAGAAGAGGGGGAAGAGGGATAAGAAGGAGCGGGATGCTGCCGCTCCGGTGGCTGTGGCTGCGTCGCCGGCGGCGGAGGTGGTGGGGAGGCGGCTGCGGGTGTACTGGCCGCTGGACGACGCGTGGTACGAGGGGAGGGTAGAGGCCTACGATGCGGCCTCAGGCAAGCACTGTGTGAAGTACGACGATGGCGACGAGGAGCAGGTCGACCTCGGGAAGGAGAGGTTCGAGTGGGCCGCCGCAGGTGAGGAGTCCACCCCGACGCCCGCGAGGAAGCTGCGGCGTCTTCGGCGGATGTCGGATACAGCGGTTGCAAAATCTCCGGCTGTGGCAGAGGATGAGGAGGATGGCGCAGGGGATTCCACTGAGCACGAGGATTGGAAGAAGGATACTCTCGCGGAGGATGATTTGGAGGAGGAGGTGGAACTGGATGACGAGGAGGAGGTTGTTGCGGTGAGTTCACGTAAGGGGAAGACGAGGAACTCCTTGCCGGTGTCAGGTTCAGCGCCATCGACATTGGGCTTTGGCTTGATATCTGCGTCGGGGTCAACAATTTCGAAGAAGAGGAAAAAGGTGGATGTGGGTTCATTGGATTGTGCTAAAAGGTTCAGCTTTGAAGCAGTTAATACCTCTGGAAAAGTTGACCCAGAAATGCGGATCAGCTGTGGCCAGAAGGAGCAAACTACAGGGAATGCTAATACTGCTCTTACTGGGGAGGCAGCTGAGCGCTTTGCACAGCGTGATGTGGAAAAGTTTAAATTCCTTGGAGAAGGGCGCAAAGACGCAAAAGGCAGGCGCCCTGGAAGCCCGGGCTATGATCCAAGAACACTTTTATTGCCTTCCCAGTTCTTGAAGGGTTTGACAGGAGGACAGAGACAATGGTGGGAATTTAAATCACAACACATGGACAAGGTTCTGTTCTTCAAGATGGGAAAATTCTACGAACTATTTGAGATGGATGCACATGTTGGGGCAAAGGACCTTGATCTTCAGTACATGAAGGGTGAACAACCTCACTGTGGATTCCCAGAGAAGAATTTATCAGTGAACTTGGAGAAACTAGCTAAGAAGGGTTATCGAGTTCTGGTTGTGGAGCAGACTGAAACACCTGAGCAACTTGAACTCCGGCGTAAGGCGATGGGTATAAAGGACAAGGTTGTGAGGCGTGAAATATGCGCAGTGGTCACAAAAGGAACACTGACAGAAGGAGAGAACCTACTGGCAAACCCAGATCCATTGTATCTCCTTTCTGTGACTGAAAGTCACCAACAAAGTTCAAAGAAGAGCGAAGACACTTGTACCATTGGTGTTTGCATAGTTGATGTTTCTACAAACAAATTTATTGTAGGACAGTTCCAAGACGATCCAGAGCGCCATGGGTTATGTTCAATTTTGTCCGAAATGAGGCCTGTGGAAATCATCAAGCCTGGTAAAATGCTGAGTCCAGAAACTGAGAAGGCACTAAAGAACAACACAAGGGAGCCTTTAATAAATGAGTTGCTTCCATCCGCAGAATTCTGGGATGCAGAAAAGACTATTCATGAGATAAAGCAGTACTACAGCTCAGCAGATAAACAAAACAATGTCAATGATGTACAGGACAGCATGGACTGTCTGCCCAACCTATTAAATGACTTAATTGGAGCAGGTGATAAAATATATGCACTTTCTGCTCTTGGAGGTTCCTTATTTTATTTAAGGCAAACCCTTCTGGATGAGAAAATACTTCTATGTGCTGAGTTTGAGCCCCTTGCATGCTCGGGGCTCATCAACAATATCCGAAAGCATATGATACTTGATGCAGCAGCACTGGAAAATCTAGAACTTTTAGAAAATATCAGAACTGGTGGCCTGTCAGGGACCCTGTATGCACAGTTGAACCATTGTGTTACTGGATTTGGGAAGAGGCTGCTTAAACGGTGGATTGCAAGGCCATTGTATGATCGCGGAGCAATACTAAGGCGTCAAAGCGCTATTGCTACTTTCAAGGGAGTTGGACATGACTATGCTGTTCAGTTTCGTAAGGATTTGTCTAGGCTACCTGACATGGAGCGCTTGCTTGCACGTCTTTTCTCTAGCTGTGACAAAAACAAGAGAAATTCATCAGTTGTTCTTTATGAAGACGCATCAAAGAGACTGCTTCAACAGTTCACCGCTGCTCTTCGTGGTTGCCAGCAGATGTTCCATGCATGTTCTTCTATTAGTACATTGATATGCACGGAGGAGTCTCAACTAAATGATTTGCTCTCACCAGGCACAGGGCTACCGGATGTATCATCTATTTTAGACCGATTCAGAGATGCATTTGATTGGTCAGATGCAGACAGCAATGGTCGGGTCATTCCCCGTGAAGGTTGTGATCCTGAATATGACGCCACTTGCAATGCAATACAGGAGATCGGATCCAGTCTAAAAGAATACCTGAAGAAGCAACGGAAGCTTTTGCGATGTGCATCGGTTGATTATGTTAATGTTGGAAAAGATATGTACCTAATTGAAGTGCCTGAGAGCCTGGGAGGTTCTGTTCCTGGAAACTATGAGTTGCAGTCTACAAAAAAGGGTTTCTATAGGTACTGGACGCCAGAACTGAAAGAACTAATATCAGAACTTTCGAAGGCTGAGGCAGAGAGAGAATCAATATTGAAAGGCATTCTTCAGAATTTGATTCAGCTATTTGTTGAGCATCACAGCGAGTGGAGGCAATTGGTTTCTGTTGTTGCTGAGCTTGATGTCTTAATAAGTCTTTCTATTGCAAGTGATTATTTTGAGGGCGCAAGTTGCCGTCCAACTATCAAAGAATCAAATGGCCCAGATGATACTCCTACTTTCCACGCCAGAAATCTTGGACACCCCATTCTACGAAGTGATTCCTTAGGCAAGGGTTCTTTTGTACCGAATGATGTTAAGATAGGTGGGCCAGGGAATGCCAGCTTTATTGTTCTTACTGGTCCGAATATGGGTGGTAAATCAACTCTTTTGCGCCAAGTTTGTCTTACTATTATATTGGCTCAGATTGGAGCAGATGTTCCTGCAGAAAACCTTGAACTTTCTCTTGTTGACCGTATCTTTGTTCGAATGGGAGCAAGGGATCATATTATGTCCGGCCAAAGTACATTCTTGGTGGAGCTCATGGAAACTGCCTCGGTGCTTTCATCAGCTACCAAGAATTCTCTCGTGGTTTTAGATGAGCTTGGGCGGGGTACATCGACTTCTGATGGACAAGCTATTGCGGCCTCTGTTCTGGAATATCTAGTTCATCAGGTGCAGTGTCTAGGCTTGTTTTCTACACATTACCATAGGTTAGCTGTGGAACACAAGGATGCGAAGGTATCTCTATGTCATATGGCATGCGAGGTAGGCAAGGGAGAAGGAGGTCTGGAGGAAGTGACTTTCCTTTATAGATTAACTCCTGGTGCATGCCCCAAAAGCTATGGTGTAAACGTTGCTCGATTGGCAGGAATACCTGCTTCGGTGCTTCAGAGGGCTAACGAGAAGTCAAATGACTTTGAGGCCAATTACGGGAAGCGACACCGTATGATCAAAGATAAGCATGCCAGTGCACAGAGTGAGGATAAGTTTTCTGCCATCAGGGATTTATTCCGCATTGTGAATGCATGGCCTTGTCCTGATGGTCAGGCAGCGAGTATAAACATGCTCCGTGAAGTGCAGAAGCTTGCCAAGGTGCAGGCTGTGGAAGGTTAA
Protein:  
MASRRASNGRSPLVRKQSQITAFFSSSPTPSPSPSTPNAGAPKPSPSPLNPSAARRSTLAAASPSPPKQPMPTPPPAQEEKRGKRDKKERDAAAPVAVAASPAAEVVGRRLRVYWPLDDAWYEGRVEAYDAASGKHCVKYDDGDEEQVDLGKERFEWAAAGEESTPTPARKLRRLRRMSDTAVAKSPAVAEDEEDGAGDSTEHEDWKKDTLAEDDLEEEVELDDEEEVVAVSSRKGKTRNSLPVSGSAPSTLGFGLISASGSTISKKRKKVDVGSLDCAKRFSFEAVNTSGKVDPEMRISCGQKEQTTGNANTALTGEAAERFAQRDVEKFKFLGEGRKDAKGRRPGSPGYDPRTLLLPSQFLKGLTGGQRQWWEFKSQHMDKVLFFKMGKFYELFEMDAHVGAKDLDLQYMKGEQPHCGFPEKNLSVNLEKLAKKGYRVLVVEQTETPEQLELRRKAMGIKDKVVRREICAVVTKGTLTEGENLLANPDPLYLLSVTESHQQSSKKSEDTCTIGVCIVDVSTNKFIVGQFQDDPERHGLCSILSEMRPVEIIKPGKMLSPETEKALKNNTREPLINELLPSAEFWDAEKTIHEIKQYYSSADKQNNVNDVQDSMDCLPNLLNDLIGAGDKIYALSALGGSLFYLRQTLLDEKILLCAEFEPLACSGLINNIRKHMILDAAALENLELLENIRTGGLSGTLYAQLNHCVTGFGKRLLKRWIARPLYDRGAILRRQSAIATFKGVGHDYAVQFRKDLSRLPDMERLLARLFSSCDKNKRNSSVVLYEDASKRLLQQFTAALRGCQQMFHACSSISTLICTEESQLNDLLSPGTGLPDVSSILDRFRDAFDWSDADSNGRVIPREGCDPEYDATCNAIQEIGSSLKEYLKKQRKLLRCASVDYVNVGKDMYLIEVPESLGGSVPGNYELQSTKKGFYRYWTPELKELISELSKAEAERESILKGILQNLIQLFVEHHSEWRQLVSVVAELDVLISLSIASDYFEGASCRPTIKESNGPDDTPTFHARNLGHPILRSDSLGKGSFVPNDVKIGGPGNASFIVLTGPNMGGKSTLLRQVCLTIILAQIGADVPAENLELSLVDRIFVRMGARDHIMSGQSTFLVELMETASVLSSATKNSLVVLDELGRGTSTSDGQAIAASVLEYLVHQVQCLGLFSTHYHRLAVEHKDAKVSLCHMACEVGKGEGGLEEVTFLYRLTPGACPKSYGVNVARLAGIPASVLQRANEKSNDFEANYGKRHRMIKDKHASAQSEDKFSAIRDLFRIVNAWPCPDGQAASINMLREVQKLAKVQAVEG